Fluffy Japanese Cotton Cheesecake Cupcakes: Light, Creamy, and Irresistible

If you’re a cheesecake lover who enjoys something soft, airy, and melt-in-your-mouth, these Fluffy Japanese Cotton Cheesecake Cupcakes are an absolute dream. With their signature jiggly texture and delicate sweetness, they’re the perfect blend of cheesecake and soufflé. I once topped them with a touch of lemon zest and a dusting of powdered sugar, and it made them even more refreshing and elegant. These little cheesecakes are perfect for tea parties, brunches, or anytime you crave a light, creamy dessert that feels like a cloud.

Why You’ll Love This Recipe

These cupcakes are all about texture — pillowy soft, moist, and gently sweet. Unlike traditional dense cheesecakes, Japanese cotton cheesecake cupcakes are baked in a water bath, which gives them their signature light and bouncy consistency. You’ll love how they rise beautifully in the oven and settle into a silky, creamy center as they cool. They’re simple to make, individually portioned, and absolutely delightful to serve. Each bite feels like a delicate, airy kiss of sweetness.

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Fluffy Japanese Cotton Cheesecake Cupcakes: Light, Creamy, and Irresistible


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  • Author: Isabella
  • Total Time: 50 minutes
  • Yield: 9 cupcakes
  • Diet: Vegetarian

Description

Fluffy Japanese Cotton Cheesecake Cupcakes are light, airy, and melt-in-your-mouth mini cheesecakes with a delicate texture that’s both creamy and souffle-like. These elegant cupcakes are subtly sweet and perfectly balanced — a delightful dessert for any occasion.


Ingredients

  • 4 oz (115g) cream cheese, softened
  • 2 tbsp unsalted butter
  • 1/4 cup (60ml) milk
  • 3 large eggs, separated
  • 1/4 cup (30g) cake flour
  • 1 tbsp cornstarch
  • 1/4 cup (50g) granulated sugar (for yolk mixture)
  • 1/4 cup (50g) granulated sugar (for egg whites)
  • 1/4 tsp cream of tartar or lemon juice
  • 1/2 tsp vanilla extract
  • Powdered sugar, for dusting (optional)


Instructions

  1. Preheat oven to 320°F (160°C). Line a muffin tin with cupcake liners and place the tin in a deep baking pan for a water bath setup.
  2. In a heatproof bowl, melt cream cheese, butter, and milk over a double boiler. Stir until smooth and combined. Let cool slightly.
  3. Whisk in egg yolks, one at a time, then add vanilla extract. Sift in cake flour and cornstarch, and whisk until smooth with no lumps.
  4. In a clean bowl, beat egg whites with cream of tartar until foamy. Gradually add 1/4 cup sugar and beat until soft peaks form.
  5. Fold one-third of the meringue into the cream cheese mixture to lighten it, then gently fold in the rest in two batches until fully combined. Be careful not to deflate the batter.
  6. Divide the batter evenly among the cupcake liners, filling about 3/4 full.
  7. Pour hot water into the outer baking pan (about halfway up the muffin tin) to create a water bath.
  8. Bake for 25–30 minutes, or until the tops are lightly golden and set. Turn off the oven, crack the door slightly, and let cupcakes rest for 10 minutes before removing to prevent collapse.
  9. Cool completely, then dust with powdered sugar before serving.

Notes

  • All ingredients should be at room temperature for the smoothest texture.
  • Use cake flour for the softest and most delicate crumb.
  • Store in the refrigerator for up to 3 days — best served chilled or at room temperature.
  • Top with fresh berries, whipped cream, or fruit glaze for extra flair.
  • Prep Time: 20 minutes
  • Cook Time: 30 minutes
  • Category: Dessert
  • Method: Baking (Water Bath)
  • Cuisine: Japanese

Ingredients

(Tip: You can find the complete list of ingredients and their measurements in the recipe card below.)

Cream Cheese – The star ingredient that provides richness and creaminess.

Butter – Adds a smooth, velvety texture and enhances the flavor.

Milk – Keeps the batter silky and light. Whole milk works best.

Eggs – Separate the yolks and whites; the whites create that signature airy texture.

Sugar – Sweetens the batter and helps stabilize the egg whites when beaten.

Cake Flour – Keeps the texture soft and delicate. Avoid using all-purpose flour.

Cornstarch – Adds extra lightness and prevents the cakes from becoming dense.

Lemon Juice or Cream of Tartar – Helps stabilize the meringue for a fluffy rise.

Vanilla Extract – Adds warmth and subtle aroma.

Salt – Balances the sweetness and deepens the flavor.

Directions

Preheat your oven to 300°F (150°C). Line a muffin pan with cupcake liners. Prepare a large baking pan or tray for a water bath — this will keep the cakes moist and prevent cracks.

In a small saucepan, heat cream cheese, butter, and milk over low heat until smooth. Remove from heat and let cool slightly. Whisk in the egg yolks and vanilla extract until fully combined. Sift in the cake flour, cornstarch, and salt, then gently whisk until the batter is smooth and lump-free.

In a separate clean bowl, beat the egg whites with lemon juice or cream of tartar until foamy. Gradually add the sugar, beating until soft peaks form. The meringue should be glossy and hold its shape without being stiff.

Gently fold one-third of the meringue into the cream cheese mixture to lighten it, then fold in the remaining meringue in two additions. Be careful not to overmix — you want to keep as much air in the batter as possible.

Spoon the batter evenly into the cupcake liners, filling each about ¾ full. Place the muffin pan inside the larger baking tray, then pour hot water into the tray until it reaches halfway up the sides of the muffin pan.

Bake for 25–30 minutes, or until the tops are lightly golden and set. Turn off the oven and let the cupcakes rest inside with the door slightly open for 10 minutes to prevent sudden shrinkage. Remove from the oven and let cool completely.

Dust with powdered sugar or top with fruit compote for a finishing touch.

Equipment needed :

Must-Have Tools to Get Rolling

Here’s what you’ll want to have on hand:

Silicone Spatula – Durable, heat-resistant silicone spatula perfect for mixing, scraping, and spreading. Gentle on non-stick cookware and easy to clean.

Large pot – You’ll need this to boil the whole cabbage head and soften the leaves.

large bowl –Spacious, durable large bowl ideal for mixing, serving, or food preparation. Made from sturdy material and easy to clean.

Sharp knife – For coring the cabbage and slicing out the thick stem in each leaf. A paring knife works best.

Mixing bowl – A big bowl makes it easier to combine your meat and rice filling evenly.

Cutting board – For prepping cabbage leaves and rolling them like a pro.

9×13-inch baking dish – Ideal size to fit your rolled cabbage leaves snugly and prevent them from unraveling.

knife – A sharp, durable kitchen knife perfect for slicing, chopping, and dicing with ease.

Servings and timing

This recipe makes about 12 cupcakes and takes 45 minutes total — 15 minutes of prep, 25–30 minutes of baking, and 10 minutes of cooling. Perfect for dessert or an elegant afternoon tea.

Storage/reheating

Store the cupcakes in an airtight container in the refrigerator for up to 4 days. For the best texture, bring them to room temperature before serving. You can also freeze them for up to 1 month — thaw in the fridge overnight. Avoid microwaving, as it can alter the texture.

Variations and Customizations

Lemon Cotton Cheesecake Cupcakes: Add 1 tablespoon of lemon juice and zest for a citrusy flavor.

Chocolate Marble Cupcakes: Swirl in melted chocolate before baking for a beautiful marble pattern.

Matcha Cheesecake Cupcakes: Mix in 1 teaspoon of matcha powder for a Japanese-inspired twist.

Mini Soufflé Cheesecakes: Serve warm straight from the oven for a soft, soufflé-like texture.

Fruit-Topped Cheesecakes: Top with strawberry, blueberry, or mango compote for a colorful finish.

Honey Glazed Version: Brush with honey while still warm for a glossy sheen and natural sweetness.

Coconut Cheesecake Cupcakes: Add 1 tablespoon of coconut milk and sprinkle shredded coconut on top.

Coffee Flavored: Mix in 1 teaspoon of instant coffee for a subtle mocha note.

Vanilla Bean Cheesecakes: Use real vanilla bean paste for an extra fragrant flavor.

Mini Baked Cheesecake Bites: Bake in mini muffin pans for bite-sized treats.

FAQs

Why did my cheesecakes deflate after baking?

They likely cooled too quickly — let them rest in the oven before removing.

Can I make them without a water bath?

Yes, but the texture may be slightly less moist and smooth.

Can I use all-purpose flour instead of cake flour?

You can, but the cakes will be denser. Cake flour gives the best airy texture.

How do I know when they’re done?

The tops should be lightly golden and spring back when touched.

Can I make these ahead of time?

Yes, they keep well in the fridge for several days.

Can I freeze them?

Absolutely — wrap tightly and thaw in the fridge overnight.

Can I make them without cream cheese?

No, cream cheese is essential for flavor and texture.

Why is a water bath important?

It keeps the cakes moist and prevents cracking or overbaking.

Can I add fruit inside the batter?

Yes, small bits of fresh fruit like blueberries work beautifully.

How do I serve them?

Serve plain, dusted with powdered sugar, or topped with whipped cream or jam.

Conclusion

Fluffy Japanese Cotton Cheesecake Cupcakes are the epitome of light, creamy indulgence. With their jiggly texture, delicate sweetness, and melt-in-your-mouth feel, they’re a dessert that’s as beautiful as it is delicious. Perfect for holidays, tea time, or gifting, these cupcakes offer a sophisticated twist on classic cheesecake. One bite, and you’ll understand why they’re adored around the world — soft, airy, and absolutely heavenly.

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